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Dipsacus asperoides
source:Chinese Herbal Plant Genome Database  time:2017-06-09 22:33:49

Year: 2016

InstitutionYunnan Research Center on Good Agricultural Practice for Dominant Chinese Medicinal Materials, Yunnan Agricultural University, Yunnan, China

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Material

Data

Assembly

Annotation

Sequencing platform

Data size (Gb)

Method

Contig N50 (bp)

Average length (bp)

Unigenes

Roots, tender shoots, young leaves, mature leaves, stems, flower buds. Dali   Bai minority Autonomous Prefecture, Jianchuan County, Yunnan, China

Illumina GAII

30,832,805 clean reads with 97.28% of Q20 percentage

Trinity

1,212

727

43,243

Nr, Nt, Swiss-Prot, GO, KOG, KEGG, and Pfam

Publication

Wang J, Liang Y, Hai M, et al. Genome-Wide   transcriptional excavation of Dipsacus asperoides unmasked both cryptic   asperosaponin biosynthetic genes and SSR markers[J]. Frontiers in plant   science, 2016, 7.

Data link

https://trace.ncbi.nlm.nih.gov/Traces/sra/?run= SRA269859