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Atractylodes lancea
source:Chinese Herbal Plant Genome Database  time:2017-06-10 14:36:21

Year: 2016

InstitutionCollege of Pharmacy, Hubei University of Chinese Medicine, Wuhan, China

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Material

Data

Assembly

Annotation

Sequencing platform

Data size (Gb)

Method

Contig N50 (bp)

Average length (bp)

Unigenes

Leaf and rhizome, Mao Mountain, Jiangsu Province, China

Illumina HiSeq 2000

33.8

Trinity

1,100

-

92,366

Nr, Swiss-Prot, TrEMBL,GOKEGG

Publication

Huang Q, Huang X, Deng J, et   al. Differential gene expression between leaf and rhizome in Atractylodes   lancea: A comparative transcriptome analysis[J]. Frontiers in plant science,   2016, 7.

Data link

https://www.ncbi.nlm.nih.gov/sra/?term=SRP068251



Year: 2016

InstitutionDepartment of Medicinal Plant, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, P.R. China

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Material

Data

Assembly

Annotation

Sequencing platform

Data size (Gb)

Method

Contig N50 (bp)

Average length (bp)

Unigenes

Roots, stems and leaves. A herbal medicine planting field (E08°560,   N30°180) belongs to the Hubei Jintuyuan Forest Medicine & Seed Co. Ltd.

Illumina HiSeq

a total of 43,921,277, 37,866,604 and 40,135,278 clean reads were   acquired from leaf, root and stem tissues, respectively.

Trinity

1494

913

62,352

Nr, Swiss-Prot, KEGG, and COG

Publication

Ahmed S, Zhan C, Yang Y, et al.   The transcript profile of a traditional chinese medicine, Atractylodes   lancea, revealing its sesquiterpenoid biosynthesis of the major active   components[J]. PloS one, 2016, 11(3): e0151975.

Data link

https://www.ncbi.nlm.nih.gov/sra/?term= SRP070094