Species: Alisma orientale
Sample Location: Jian’ou County, Nanping City, Fujian Province in July 2016
Sample Part: roots, leaves, scapes and inforescences
Sequencing platform: Illumina HiSeq 4000
Sequencing data: 91,962,600 clean reads for RT, 94,101,458 for LF, 90,311,938 for SC and 96,595,132 for IN
Assembly and Annotation
Assembly software: Trinity
Assembly result: 40,375 unigenes in RT, 39,231 unigenes in LF, 39,450 unigenes in SC, and 40,174 unigenes in IN, unigene lengths ranged from 199 bp to13,455 bp, the average length was 1,117 bp, the N50 length was 1,727 bp, the GC percentage was 47.39%.
Annotation Method: KOG, GO, KEGG, COG, NR
Lin W , Sun F , Zhang Y , et al. Comparative transcriptome and metabolite profiling of four tissues from Alisma orientale (Sam.) Juzep reveals its inflorescence developmental and medicinal characteristics[J]. Scientific Reports, 2019, 9(1).